BICCN Human
Report card for Correlation, Tree, and Seurat Mapping
on Human motor cortex (Zemke et al. 2023)
Overview
A taxonomy was initially built using the BICCN’s human motor cortex single nucleus 10x Multiome dataset. In building the taxonomy, 1000 binary marker genes were selected based on their gene expression from the single-cell transcriptome. Subsequently, the dataset was mapped to itself, termed self-projection, for evaluating the ideal performances of correlation, tree, and seurat mapping algorithms.
Quantitative analysis
The analysis evaluates the predictions of correlation
, tree
, and Seurat
mappings in determining cluster labels in a self-projection evaluation.
Annotaion | F1-score |
---|---|
Cluster Correlation Mapping | 0.782 |
Cluster Tree Mapping | 0.758 |
Cluster Seurat Mapping | 0.981 |
Correlation Mapping
-
Label-wise F1-score
-
Confidence values for correctly and incorrectly assigned labels
-
Confusion matrix (row-normalized)
Tree Mapping
-
Label-wise F1-score
-
Confidence values for correctly and incorrectly assigned labels
-
Confusion matrix (row-normalized)
Seurat mapping
-
Label-wise F1-score
-
Confidence values for correctly and incorrectly assigned labels
-
Confusion matrix (row-normalized)